PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3845_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 225aa    MW: 25416.8 Da    PI: 6.7679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3845_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-193282255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr+++ +g+++AeIrd + ng   r++lg+f +aeeAa a+++a+ +++g
  RrC3845_p1 32 SYRGVRRRP-WGKFAAEIRDSTRNG--IRVWLGTFESAEEAALAYDQAAFSMRG 82
                69*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-293191No hitNo description
PROSITE profilePS5103223.1563290IPR001471AP2/ERF domain
SMARTSM003802.0E-373296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-303291IPR001471AP2/ERF domain
PfamPF008471.2E-133282IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-223291IPR016177DNA-binding domain
PRINTSPR003672.0E-103344IPR001471AP2/ERF domain
PRINTSPR003672.0E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MLLYGLIEQS TQQNVSVKTE EETGTSRKPE KSYRGVRRRP WGKFAAEIRD STRNGIRVWL  60
GTFESAEEAA LAYDQAAFSM RGSSAILNFP AERVKESLSE IMYSYEDGCS PVVALKRKHS  120
MRRRMTNRKT KDADFDDGSV KLDNVVVFED LGEQYLEELL GSSENSASEL QKGGVEVVIC  180
GVWQLDLRQA LIRRFATSVR FHYCLLPLPC FDGVFHLQVV GLCSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-293190160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A2e-293190463ATERF1
2gcc_A2e-293190463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256081e-138AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBankAF0762771e-138AF076277.1 Arabidopsis thaliana ethylene response factor 1 (ERF1) mRNA, complete cds.
GenBankAF0762781e-138AF076278.1 Arabidopsis thaliana ethylene response factor 1 (ERF1) gene, complete cds.
GenBankAF4283901e-138AF428390.1 Arabidopsis thaliana AT3g23240/K14B15_13 mRNA, complete cds.
GenBankAY1336291e-138AY133629.1 Arabidopsis thaliana AT3g23240/K14B15_13 mRNA, complete cds.
GenBankCP0026861e-138CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108108.11e-115PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_009108096.11e-115PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC83e-99ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLM4E4P21e-115M4E4P2_BRARP; Uncharacterized protein
STRINGBra023745.1-P1e-114(Brassica rapa)
STRINGBra023746.1-P1e-114(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-90ethylene response factor 1